Conference Talks

  de Oliveira Martins L and Christophe Dessimoz. Spectral signature of gene family trees. [BC]2 - the Basel Computational Biology Conference, Basel, Switzerland, September 13th (2017)

  de Oliveira Martins L. Simple probabilistic models from genes to species trees. PhyloSIB, Leysin, Switzerland, September 5th (2016)

  de Oliveira Martins L. Simple probabilistic models from genes to species trees. Lausanne CompBio Meeting, Lausanne, Switzerland, May 3rd (2016)

  de Oliveira Martins L, Diego Mallo and David Posada. guenomu: A Bayesian supertree program for species tree reconstruction. Evolution Meeting 2014, Raleigh, North Carolina, USA, June 20-24 (2014)

  de Oliveira Martins L and David Posada. A probabilistic parsimonious model for species tree reconstruction. Evolution Meeting 2013, Snowbird, Utah, USA, June 21-25 (2013)

  de Oliveira Martins L and David Posada. Probabilistic parsimonious reconstruction of species trees from multiple gene trees. Computational and Statistical Phylogenomics Meeting (CSPHYLO) 2012, Vigo, Spain, September 13-14 (2012)

  de Oliveira Martins L and David Posada. Inference of species tree distribution using a probabilistic reconciliation cost. Deep Metazoan Phylogeny 2011: New data, new challenges, Munich, Germany, October 11-14 (2011)

  de Oliveira Martins L and David Posada. Which fits better, one or several Common Ancestors? Pitfalls of a phylogenetic test for Universal Common Ancestry. III Xornada Galega de Bioinformática (3rd Galician Workshop on Bioinformatics), University of Vigo, Spain, September, 16th (2011)

  de Oliveira Martins L and Hirohisa Kishino. Hierarchical Bayesian model for phylogenetic detection of recombination. II Xornada Galega de Bioinformática (2nd Galician Workshop on Bioinformatics), University of Santiago de Compostela, Spain. December 4th (2009)

  de Oliveira Martins L, Élcio de Souza Leal and Hirohisa Kishino. Bayesian recombination detection based on distances between trees. The 2007 Japanese Joint Statistical Meeting, Kobe University, Japan, September 6-9 (2007)

  de Oliveira Martins L, Élcio de Souza Leal and Hirohisa Kishino. Bayesian recombination detection based on distance between trees. New Zealand's Phylogenetic Meeting, Tongariro National Park, New Zealand, February 11-16 (2007)

  de Oliveira Martins L, Élcio de Souza Leal and Hirohisa Kishino. HIV-1 inter-subtype recombination in South America. The 7th Annual Meeting of the Japanese Society of Evolutionary Studies, Tohoku University, Japan, August 26-29 (2005)

  de Oliveira Martins L, Jeffrey L. Thorne and Hirohisa Kishino. Distribution of rate variability among genes in saccharomyces genomes. The XIXth International Congress of Zoology, Beijing, China, August 23-27 (2004)

  de Oliveira Martins L, Jeffrey L. Thorne and Hirohisa Kishino. Distribution of rate and rate variability in yeast genomes. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) 2004, The Pennsylvania State University, USA, June 17-20 (2004)

  de Oliveira Martins L and Hirohisa Kishino. Distribution of rate variability among genes in saccharomyces genomes. Symposium of the Japanese Biometrics Association, Kurume University, Japan, May 27 (2004)


Invited Talks

  de Oliveira Martins L. Simple probabilistic models from genes to species trees. Invited talk at the University of Geneva, Geneva, Switzerland, February 12th (2017)

  de Oliveira Martins L. Extracting Features from Gene Families. Invited talk at the Department of Computational Biology (UNIL), Lausanne, Switzerland, November 24th (2016)

  de Oliveira Martins L. Tree distances in Bayesian phylogenetic models. Invited talk for the “basement talks” at the Institute of Biology of the University of Sao Paulo (IBUSP), Sao Paulo, Brazil, February 6th (2015)

  de Oliveira Martins L. Bayesian phylogenetics. Invited talk at the Butantan Institute, Sao Paulo, Brazil, February 4th (2015)

  de Oliveira Martins L, Diego Mallo and David Posada. guenomu: A Bayesian supertree program for species tree reconstruction. Invited talk at the Department of Genetics, Evolution & Environment of UCL, London, UK, April 24th (2014)

  de Oliveira Martins L. O puzzle da Vida (“The puzzle of Life”). Invited talk at the Department of Clinical Medicine of the University of Sao Paulo (FMUSP), Sao Paulo, Brazil, November 5th (2012)


Poster presentations

Diego Mallo, de Oliveira Martins L and David Posada. SimPhy: Comprehensive simulation of gene, locus and species trees at the genome-wide level. Evolution Meeting 2014, Raleigh, North Carolina, June 20-24 (2014)

Diego Mallo, de Oliveira Martins L and David Posada. Unsorted homology within locus and species trees. Evolution Meeting 2014, Raleigh, North Carolina, June 20-24 (2014)

de Oliveira Martins L  and David Posada. Probabilistic parsimonious reconciliation between gene trees and species trees. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) 2012, Dublin, Ireland, June 23-26 (2012)

de Oliveira Martins L  and Hirohisa Kishino. The effect of the distribution of distances between trees on detection of phylogenetic recombination. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) 2010, Lyon, France, July 4-8 (2010)

de Oliveira Martins L, Élcio de Souza Leal and Hirohisa Kishino. Distance between trees and Bayesian inference of viral recombination. Symposium of the Life Sciences Research Network of the University of Tokyo, University of Tokyo, Japan, November 25 (2006)

de Oliveira Martins L, Élcio de Souza Leal and Hirohisa Kishino. Distance between trees and Bayesian inference of viral recombination. The 8th Annual Meeting of the Japanese Society of Evolutionary Studies, National Olympics Memorial Youth Center, Japan, August 29-31 (2006)

Teruaki Watabe, Hirohisa Kishino, de Oliveira Martins L and Yasuhiro Kitasoe. Likelihood analysis of the antibody-antigen binding affinity and the change in binding affinity of the influenza virus hemagglutinin (in japanese). The 8th Annual Meeting of the Japanese Society of Evolutionary Studies, National Olympics Memorial Youth Center, Japan, August 29-31 (2006)

de Oliveira Martins L. Among-site topology distribution representation of viral recombination and the case of HIV1 in South America. Department of Agriculture and Life Sciences of the University of Tokyo (2006)

de Oliveira Martins L. Detection of adaptative evolution from viral sequence databases: structural evolution of the influenza hemagglutinin. Department of Agriculture and Life Sciences of the University of Tokyo (2005)

de Oliveira Martins L. fprotml: Protein analysis using maximum likelihood.  The Fifth Annual International Conference on Computational Molecular Biology (RECOMB2001), Montreal, Canada, April 22-25 (2001)

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