Conferences

SimPhy: Comprehensive simulation of gene, locus and species trees at the genome-wide level. [poster]
Diego Mallo, Leonardo de Oliveira Martins and David Posada. Evolution Meeting 2014, Raleigh, North Carolina, June 20-24, 2014

Unsorted homology within locus and species trees  [poster]
Diego Mallo, Leonardo de Oliveira Martins and David Posada. Evolution Meeting 2014, Raleigh, North Carolina, June 20-24, 2014

guenomu: a Bayesian supertree program for species tree reconstruction [talk]
Leonardo de Oliveira Martins, Diego Mallo and David Posada. Evolution Meeting 2014, Raleigh, North Carolina, June 20-24, 2014

A probabilistic parsimonious model for species tree reconstruction [talk]
Leonardo de Oliveira Martins and David Posada. Evolution Meeting 2013, Snowbird, Utah, June 21-25, 2013

Probabilistic parsimonious reconstruction of species trees from multiple  gene trees [talk]
Leonardo de Oliveira Martins and David Posada. Computational and Statistical Phylogenomics Meeting (CSPHYLO) 2012, Vigo, Spain, September 13-14, 2012

Probabilistic parsimonious reconciliation between gene trees and species trees [poster]
Leonardo de Oliveira Martins and David Posada. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) 2012, Dublin, Ireland, June 23-26, 2012

Inference of species tree distribution using a probabilistic reconciliation cost [talk]
Leonardo de Oliveira Martins and David Posada. Deep Metazoan Phylogeny 2011: New data, new challenges, Munich, Germany, October 11-14, 2011

Which fits better, one or several Common Ancestors? Pitfalls of a phylogenetic test for Universal Common Ancestry [talk]
Leonardo de Oliveira Martins and David Posada. III Xornada Galega de Bioinformática (3rd Galician Workshop on Bioinformatics), University of Vigo, Spain, September, 16th, 2011

The effect of the distribution of distances between trees on detection of phylogenetic recombination [poster]
Leonardo de Oliveira Martins and Hirohisa Kishino. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) 2010, Lyon, France, July 4-8, 2010

Hierarchical Bayesian model for phylogenetic detection of recombination [oral]
Leonardo de Oliveira Martins and Hirohisa Kishino. II Xornada Galega de Bioinformática (2nd Galician Workshop on Bioinformatics), University of Santiago de Compostela, Spain. December 4th, 2009

Bayesian recombination detection based on distances between trees [oral]
Leonardo de Oliveira Martins, Élcio de Souza Leal and Hirohisa Kishino. The 2007 Japanese Joint Statistical Meeting, Kobe University, Japan, September 6-9, 2007

Bayesian recombination detection based on distance between trees [oral]
Leonardo de Oliveira Martins, Élcio de Souza Leal and Hirohisa Kishino. New Zealand's Phylogenetic Meeting, Tongariro National Park, New Zealand, February 11-16, 2007
 
Distance between trees and Bayesian inference of viral recombination [poster]
Leonardo de Oliveira Martins, Élcio de Souza Leal and Hirohisa Kishino. Symposium of the Life Sciences Research Network of the University of Tokyo, University of Tokyo, Japan, November 25, 2006

Distance between trees and Bayesian inference of viral recombination [poster]
Leonardo de Oliveira Martins, Élcio de Souza Leal and Hirohisa Kishino. The 8th Annual Meeting of the Japanese Society of Evolutionary Studies, National Olympics Memorial Youth Center, Japan, August 29-31, 2006

Likelihood analysis of the antibody-antigen binding affinity and the change in binding affinity of the influenza virus hemagglutinin (in japanese) [poster]
Teruaki Watabe, Hirohisa Kishino, Leonardo de Oliveira Martins and Yasuhiro Kitasoe. The 8th Annual Meeting of the Japanese Society of Evolutionary Studies, National Olympics Memorial Youth Center, Japan, August 29-31, 2006

HIV-1 intersubtype recombination in South America [oral]
Leonardo de Oliveira Martins, Élcio de Souza Leal and Hirohisa Kishino. The 7th Annual Meeting of the Japanese Society of Evolutionary Studies, Touhoku University, Japan, August 26-29, 2005

Distribution of rate variability among genes in saccharomyces genomes [oral]
Leonardo de Oliveira Martins, Jeffrey L. Thorne and Hirohisa Kishino. The XIXth International Congress of Zoology, Beijing, China, August 23-27, 2004

Distribution of rate and rate variability in yeast genomes [oral]
Leonardo de Oliveira Martins, Jeffrey L. Thorne and Hirohisa Kishino. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE) 2004, The Pennsylvania State University, USA, June 17-20, 2004

Distribution of rate variability among genes in saccharomyces genomes [oral]
Leonardo de Oliveira Martins and Hirohisa Kishino. Symposium of the Japanese Biometrics Association, Kurume University, Japan, May 27, 2004

fprotml: Protein analysis using maximum likelihood [poster]
Leonardo de Oliveira Martins. The Fifth Annual International Conference on Computational Molecular Biology (RECOMB2001), Montreal, Canada, April 22-25, 2001

Departmental presentations

Among-site topology distribution representation of viral recombination and the case of HIV1 in South America
Poster presented at the Department of Agriculture and Life Sciences of the University of Tokyo, 2006

Detection of adaptative evolution from viral sequence databases: structural evolution of the influenza hemagglutinin
Poster presented at the Department of Agriculture and Life Sciences of the University of Tokyo, 2005

Bayesian hierarchical modeling of molecular evolution to detect viral adaptation
Proposal PhD theme presented at the Department of Agriculture and Life Sciences of the University of Tokyo, 2004
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